1 HisKA#1
431-498 aa · 68 aa · 10.3% of protein
Raw token
HisKA:431:0.00000000217:498:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS05120
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength658 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS05120Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 658 aa (27.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa658 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
541-653 aa · 113 aa · 17.2% of protein
Raw token
HATPase_c:541:8.5e-31:653:113:109- Raw architecture: HisKA:431:0.00000000217:498:69:64#HATPase_c:541:8.5e-31:653:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483527.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63083-65753Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00067RefSeq proteinWP_044997934.1
Context group ID
GCF_000154425::NZ_DS483527.1::G00024Context members
COPEUT_RS05115COPEUT_RS05120
Partner locus tags
COPEUT_RS05115COPEUT_RS05120
Partner old locus tags
COPEUT_00066COPEUT_00067
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044997934.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS05120Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00067Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483527.1Sequence record reported by the local genomic context database.
Genomic interval63 777-65 753 nt1 977 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 083-65 753 ntGCF_000154425::NZ_DS483527.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483527.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483527.1All displayed genes belong to this local TCS context.
Neighborhood span63 083-65 753 nt2 671 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 083 nt65 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS05115GCF_000154425#COPEUT_RS05115
RROmpR
63 083-63 784 nt · Reverse (-)
COPEUT_RS05120GCF_000154425#COPEUT_RS05120
HKClassicCurrent focus
63 777-65 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS05120The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0876592
Simplified PFAM architecture for HKOC_0876592
PFAM domain coverage: 286 / 658 aa (43.5%)
1 aa658 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[162-268] | HisKA[431-498] | HATPase_c[542-652]
- Domain count: 3
- Matched identifier: HKOC_0876592
- Positioned domains: DUF4118 162-268 ; HisKA 431-498 ; HATPase_c 542-652
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS05120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key