1 sCache_like#1
76-139 aa · 64 aa · 14.1% of protein
Raw token
sCache_like:76:0.00000589:139:64:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS03735
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS03735Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage272 / 454 aa (59.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation4 items
2 HAMP#2
163-197 aa · 35 aa · 7.7% of protein
Raw token
HAMP:163:0.0000561:197:35:693 HisKA#3
228-292 aa · 65 aa · 14.3% of protein
Raw token
HisKA:228:2.54e-16:292:65:644 HATPase_c#4
343-450 aa · 108 aa · 23.8% of protein
Raw token
HATPase_c:343:2.97e-30:450:108:109- Raw architecture: sCache_like:76:0.00000589:139:64:114#HAMP:163:0.0000561:197:35:69#HisKA:228:2.54e-16:292:65:64#HATPase_c:343:2.97e-30:450:108:109
- Domain description: 1 sCache_like,1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483526.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144088-146133Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02145RefSeq proteinWP_004850088.1
Context group ID
GCF_000154425::NZ_DS483526.1::G00030Context members
COPEUT_RS03730COPEUT_RS03735
Partner locus tags
COPEUT_RS03730COPEUT_RS03735
Partner old locus tags
COPEUT_02144COPEUT_02145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004850088.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS03735Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483526.1Sequence record reported by the local genomic context database.
Genomic interval144 769-146 133 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 088-146 133 ntGCF_000154425::NZ_DS483526.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483526.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483526.1All displayed genes belong to this local TCS context.
Neighborhood span144 088-146 133 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 088 nt146 133 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS03730GCF_000154425#COPEUT_RS03730
RROmpR
144 088-144 762 nt · Forward (+)
COPEUT_RS03735GCF_000154425#COPEUT_RS03735
HKClassicCurrent focus
144 769-146 133 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS03735The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1912084
Simplified PFAM architecture for HKOC_1912084
PFAM domain coverage: 171 / 454 aa (37.7%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[228-292] | HATPase_c[343-448]
- Domain count: 2
- Matched identifier: HKOC_1912084
- Positioned domains: HisKA 228-292 ; HATPase_c 343-448
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS03735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key