1 HisKA#1
356-419 aa · 64 aa · 11.3% of protein
Raw token
HisKA:356:0.000000000000314:419:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS03355
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS03355Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 567 aa (29.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
463-566 aa · 104 aa · 18.3% of protein
Raw token
HATPase_c:463:0.00000000000000352:566:109:109- Raw architecture: HisKA:356:0.000000000000314:419:64:64#HATPase_c:463:0.00000000000000352:566:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483526.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60413-62889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02054RefSeq proteinWP_044997829.1
Context group ID
GCF_000154425::NZ_DS483526.1::G00028Context members
COPEUT_RS03350COPEUT_RS03355
Partner locus tags
COPEUT_RS03350COPEUT_RS03355
Partner old locus tags
COPEUT_02053COPEUT_02054
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044997829.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS03355Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02054Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483526.1Sequence record reported by the local genomic context database.
Genomic interval61 186-62 889 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 413-62 889 ntGCF_000154425::NZ_DS483526.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483526.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483526.1All displayed genes belong to this local TCS context.
Neighborhood span60 413-62 889 nt2 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 413 nt62 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS03350GCF_000154425#COPEUT_RS03350
RROmpR
60 413-61 093 nt · Forward (+)
COPEUT_RS03355GCF_000154425#COPEUT_RS03355
HKClassicCurrent focus
61 186-62 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS03355The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1224811
Simplified PFAM architecture for HKOC_1224811
PFAM domain coverage: 162 / 567 aa (28.6%)
1 aa567 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[357-418] | HATPase_c[464-563]
- Domain count: 2
- Matched identifier: HKOC_1224811
- Positioned domains: HisKA 357-418 ; HATPase_c 464-563
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS03355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key