1 HisKA#1
122-180 aa · 59 aa · 17.4% of protein
Raw token
HisKA:122:0.00000247:180:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS03270
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS03270Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 339 aa (49.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-333 aa · 108 aa · 31.9% of protein
Raw token
HATPase_c:226:2.29e-16:333:108:109- Raw architecture: HisKA:122:0.00000247:180:61:64#HATPase_c:226:2.29e-16:333:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483526.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40946-42658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02035RefSeq proteinWP_004849888.1
Context group ID
GCF_000154425::NZ_DS483526.1::G00027Context members
COPEUT_RS03265COPEUT_RS03270
Partner locus tags
COPEUT_RS03265COPEUT_RS03270
Partner old locus tags
COPEUT_02034COPEUT_02035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004849888.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS03270Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483526.1Sequence record reported by the local genomic context database.
Genomic interval41 639-42 658 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 946-42 658 ntGCF_000154425::NZ_DS483526.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483526.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483526.1All displayed genes belong to this local TCS context.
Neighborhood span40 946-42 658 nt1 713 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 946 nt42 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS03265GCF_000154425#COPEUT_RS03265
RROmpR
40 946-41 614 nt · Forward (+)
COPEUT_RS03270GCF_000154425#COPEUT_RS03270
HKClassicCurrent focus
41 639-42 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS03270The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2839576
Simplified PFAM architecture for HKOC_2839576
PFAM domain coverage: 109 / 339 aa (32.2%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[226-334]
- Domain count: 1
- Matched identifier: HKOC_2839576
- Positioned domains: HATPase_c 226-334
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS03270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key