1 HAMP#1
89-159 aa · 71 aa · 18.7% of protein
Raw token
HAMP:89:0.000000000906:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS02895
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS02895Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 380 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.6% of protein
Raw token
HisKA:164:0.000000000203:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.7% of protein
Raw token
HATPase_c:272:2.11e-31:380:109:109- Raw architecture: HAMP:89:0.000000000906:159:71:69#HisKA:164:0.000000000203:230:67:64#HATPase_c:272:2.11e-31:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483525.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119580-121357Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_01944RefSeq proteinWP_004849725.1
Context group ID
GCF_000154425::NZ_DS483525.1::G00033Context members
COPEUT_RS02890COPEUT_RS02895
Partner locus tags
COPEUT_RS02890COPEUT_RS02895
Partner old locus tags
COPEUT_01943COPEUT_01944
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004849725.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS02895Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_01944Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483525.1Sequence record reported by the local genomic context database.
Genomic interval120 215-121 357 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 580-121 357 ntGCF_000154425::NZ_DS483525.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483525.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483525.1All displayed genes belong to this local TCS context.
Neighborhood span119 580-121 357 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 580 nt121 357 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS02890GCF_000154425#COPEUT_RS02890
RROmpR
119 580-120 218 nt · Forward (+)
COPEUT_RS02895GCF_000154425#COPEUT_RS02895
HKClassicCurrent focus
120 215-121 357 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS02895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2610306
Simplified PFAM architecture for HKOC_2610306
PFAM domain coverage: 172 / 380 aa (45.3%)
1 aa380 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[275-380]
- Domain count: 2
- Matched identifier: HKOC_2610306
- Positioned domains: HisKA 164-229 ; HATPase_c 275-380
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS02895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key