1 HisKA#1
326-390 aa · 65 aa · 12.1% of protein
Raw token
HisKA:326:0.0000000000037:390:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00285
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS00285Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 537 aa (29.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
433-526 aa · 94 aa · 17.5% of protein
Raw token
HATPase_c:433:0.0000181:526:99:109- Raw architecture: HisKA:326:0.0000000000037:390:65:64#HATPase_c:433:0.0000181:526:99:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483520.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63155-65610Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02859RefSeq proteinWP_004848691.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00041Context members
COPEUT_RS00280COPEUT_RS00285
Partner locus tags
COPEUT_RS00280COPEUT_RS00285
Partner old locus tags
COPEUT_02858COPEUT_02859
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004848691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00285Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02859Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval63 997-65 610 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 155-65 610 ntGCF_000154425::NZ_DS483520.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span63 155-65 610 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 155 nt65 610 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS00280GCF_000154425#COPEUT_RS00280
RROmpR
63 155-63 916 nt · Forward (+)
COPEUT_RS00285GCF_000154425#COPEUT_RS00285
HKClassicCurrent focus
63 997-65 610 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00285The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1330427
Simplified PFAM architecture for HKOC_1330427
PFAM domain coverage: 157 / 537 aa (29.2%)
1 aa537 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[326-390] | HATPase_c[434-525]
- Domain count: 2
- Matched identifier: HKOC_1330427
- Positioned domains: HisKA 326-390 ; HATPase_c 434-525
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key