1 Response_reg#1
32-142 aa · 111 aa · 43.9% of protein
Raw token
Response_reg:32:1.38e-28:142:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00280
Response regulator OmpR family
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassRRTypeOmpRLength253 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS00280Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 253 aa (72.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
177-249 aa · 73 aa · 28.9% of protein
Raw token
Trans_reg_C:177:1.48e-27:249:76:77- Raw architecture: Response_reg:32:1.38e-28:142:112:111#Trans_reg_C:177:1.48e-27:249:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483520.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63155-65610Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02858RefSeq proteinWP_004848689.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00041Context members
COPEUT_RS00280COPEUT_RS00285
Partner locus tags
COPEUT_RS00280COPEUT_RS00285
Partner old locus tags
COPEUT_02858COPEUT_02859
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004848689.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00280Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02858Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval63 155-63 916 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 155-65 610 ntGCF_000154425::NZ_DS483520.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span63 155-65 610 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 155 nt65 610 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS00280GCF_000154425#COPEUT_RS00280
RROmpRCurrent focus
63 155-63 916 nt · Forward (+)
COPEUT_RS00285GCF_000154425#COPEUT_RS00285
HKClassic
63 997-65 610 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0695357
Simplified PFAM architecture for RROC_0695357
PFAM domain coverage: 182 / 253 aa (71.9%)
1 aa253 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[32-142] | Trans_reg_C[179-249]
- Domain count: 2
- Matched identifier: RROC_0695357
- Positioned domains: Response_reg 32-142 ; Response_reg 32-142 ; Trans_reg_C 179-249 ; Trans_reg_C 179-249
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key