1 Response_reg#1
9-117 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:9:1.54e-17:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00050
Response regulator LytTR family
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS00050Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 241 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-233 aa · 90 aa · 37.3% of protein
Raw token
LytTR:144:2.48e-17:233:95:98- Raw architecture: Response_reg:9:1.54e-17:117:113:111#LytTR:144:2.48e-17:233:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483520.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8182-8907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02804RefSeq proteinWP_004848593.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00038Context members
COPEUT_RS00050
Partner locus tags
COPEUT_RS00050
Partner old locus tags
COPEUT_02804
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004848593.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00050Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02804Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval8 182-8 907 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 182-8 907 ntGCF_000154425::NZ_DS483520.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span8 182-8 907 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 182 nt8 907 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS00050GCF_000154425#COPEUT_RS00050
RRLytTRCurrent focus
8 182-8 907 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862775
Simplified PFAM architecture for RROC_0862775
PFAM domain coverage: 202 / 241 aa (83.8%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[9-121] | LytTR[144-232]
- Domain count: 2
- Matched identifier: RROC_0862775
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; LytTR 144-232 ; LytTR 144-232
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key