1 HisKA_3#1
155-224 aa · 70 aa · 19.7% of protein
Raw token
HisKA_3:155:5.7e-21:224:70:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9525_RS11070
Histidine kinase, Classic
Enterococcus faecium TX0133a04 · GCF_000147235
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000147235#HMPREF9525_RS11070Stable P2CS identifier used across views.
GenomeGCF_000147235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 355 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
262-351 aa · 90 aa · 25.4% of protein
Raw token
HATPase_c:262:8.69e-18:351:105:109- Raw architecture: HisKA_3:155:5.7e-21:224:70:68#HATPase_c:262:8.69e-18:351:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000147235::NZ_GL455014.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4056-5762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9525_02382RefSeq proteinWP_002321487.1
Context group ID
GCF_000147235::NZ_GL455014.1::G00015Context members
HMPREF9525_RS11070HMPREF9525_RS11075
Partner locus tags
HMPREF9525_RS11070HMPREF9525_RS11075
Partner old locus tags
HMPREF9525_02382HMPREF9525_02383
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002321487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9525_RS11070Primary locus identifier stored in the genes table.
Old locus tagHMPREF9525_02382Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455014.1Sequence record reported by the local genomic context database.
Genomic interval4 056-5 123 nt1 068 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 056-5 762 ntGCF_000147235::NZ_GL455014.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147235::NZ_GL455014.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455014.1All displayed genes belong to this local TCS context.
Neighborhood span4 056-5 762 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 056 nt5 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9525_RS11070GCF_000147235#HMPREF9525_RS11070
HKClassicCurrent focus
4 056-5 123 nt · Forward (+)
HMPREF9525_RS11075GCF_000147235#HMPREF9525_RS11075
RRNarL
5 130-5 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS11070The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775027
Simplified PFAM architecture for HKOC_2775027
PFAM domain coverage: 159 / 355 aa (44.8%)
1 aa355 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[155-223] | HATPase_c[262-351]
- Domain count: 2
- Matched identifier: HKOC_2775027
- Positioned domains: HisKA_3 155-223 ; HATPase_c 262-351
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 523 · GCF_000147235
AssemblyASM14723v1 · Scaffoldhaploid
Genome composition2 922 651 bp · 37,5% GCEnterococcus faecium TX0133a04
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key