1 Response_reg#1
4-113 aa · 110 aa · 45.5% of protein
Raw token
Response_reg:4:0.000000000000531:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9525_RS10400
Response regulator LytTR family
Enterococcus faecium TX0133a04 · GCF_000147235
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000147235#HMPREF9525_RS10400Stable P2CS identifier used across views.
GenomeGCF_000147235Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 242 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-240 aa · 91 aa · 37.6% of protein
Raw token
LytTR:150:5.15e-21:240:96:98- Raw architecture: Response_reg:4:0.000000000000531:113:112:111#LytTR:150:5.15e-21:240:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000147235::NZ_GL455009.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7003-7731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9525_02241RefSeq proteinWP_002286278.1
Context group ID
GCF_000147235::NZ_GL455009.1::G00013Context members
HMPREF9525_RS10400
Partner locus tags
HMPREF9525_RS10400
Partner old locus tags
HMPREF9525_02241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002286278.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y2X2Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y2X2_ENTFDDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9525_RS10400Primary locus identifier stored in the genes table.
Old locus tagHMPREF9525_02241Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL455009.1Sequence record reported by the local genomic context database.
Genomic interval7 003-7 731 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 003-7 731 ntGCF_000147235::NZ_GL455009.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000147235::NZ_GL455009.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL455009.1All displayed genes belong to this local TCS context.
Neighborhood span7 003-7 731 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 003 nt7 731 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9525_RS10400GCF_000147235#HMPREF9525_RS10400
RRLytTRCurrent focus
7 003-7 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS10400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843592
Simplified PFAM architecture for RROC_0843592
PFAM domain coverage: 208 / 242 aa (86.0%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-121] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0843592
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS10400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 523 · GCF_000147235
AssemblyASM14723v1 · Scaffoldhaploid
Genome composition2 922 651 bp · 37,5% GCEnterococcus faecium TX0133a04
Signal transduction countsGenes 34 · HK 16 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key