1 Response_reg#1
18-108 aa · 91 aa · 40.1% of protein
Raw token
Response_reg:18:0.00000322:108:92:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS08785
Response regulator LytTR family
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000146405#HMPREF9319_RS08785Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 227 aa (78.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-222 aa · 87 aa · 38.3% of protein
Raw token
LytTR:136:2.69e-20:222:92:98- Raw architecture: Response_reg:18:0.00000322:108:92:111#LytTR:136:2.69e-20:222:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000146405::NZ_GL397128.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1831250-1831933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_1832RefSeq proteinWP_003066571.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00015Context members
HMPREF9319_RS08785
Partner locus tags
HMPREF9319_RS08785
Partner old locus tags
HMPREF9319_1832
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003066571.1Primary protein accession used for annex mappings.
UniProt accessionE0PG59Primary UniProt accession resolved in the annex database.
UniProt IDE0PG59_STREIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS08785Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_1832Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval1 831 250-1 831 933 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 831 250-1 831 933 ntGCF_000146405::NZ_GL397128.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span1 831 250-1 831 933 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 831 250 nt1 831 933 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9319_RS08785GCF_000146405#HMPREF9319_RS08785
RRLytTRCurrent focus
1 831 250-1 831 933 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433675#DW244_RS03855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0829502
Simplified PFAM architecture for RROC_0829502
PFAM domain coverage: 190 / 243 aa (78.2%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[22-123] | LytTR[152-239]
- Domain count: 2
- Matched identifier: RROC_0829502
- Positioned domains: Response_reg 22-123 ; Response_reg 22-123 ; LytTR 152-239 ; LytTR 152-239
Cluster members and taxonomy
Representative gene: GCF_003433675#DW244_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key