1 sCache_like#1
36-125 aa · 90 aa · 16.4% of protein
Raw token
sCache_like:36:0.000000109:125:99:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS08545
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS08545Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_9HisKAHATPase_c
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage356 / 550 aa (64.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation4 items
2 PAS_9#2
233-324 aa · 92 aa · 16.7% of protein
Raw token
PAS_9:233:0.00000021:324:101:1023 HisKA#3
332-396 aa · 65 aa · 11.8% of protein
Raw token
HisKA:332:0.00000000000000579:396:65:644 HATPase_c#4
440-548 aa · 109 aa · 19.8% of protein
Raw token
HATPase_c:440:3.49e-29:548:109:109- Raw architecture: sCache_like:36:0.000000109:125:99:114#PAS_9:233:0.00000021:324:101:102#HisKA:332:0.00000000000000579:396:65:64#HATPase_c:440:3.49e-29:548:109:109
- Domain description: 1 sCache_like,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1787432-1789754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_1783RefSeq proteinWP_003066477.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00014Context members
HMPREF9319_RS08545HMPREF9319_RS08550
Partner locus tags
HMPREF9319_RS08545HMPREF9319_RS08550
Partner old locus tags
HMPREF9319_1783HMPREF9319_1784
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003066477.1Primary protein accession used for annex mappings.
UniProt accessionE0PG10Primary UniProt accession resolved in the annex database.
UniProt IDE0PG10_STREIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS08545Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_1783Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval1 787 432-1 789 084 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 787 432-1 789 754 ntGCF_000146405::NZ_GL397128.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span1 787 432-1 789 754 nt2 323 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 787 432 nt1 789 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS08545GCF_000146405#HMPREF9319_RS08545
HKClassicCurrent focus
1 787 432-1 789 084 nt · Reverse (-)
HMPREF9319_RS08550GCF_000146405#HMPREF9319_RS08550
RROmpR
1 789 077-1 789 754 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS08545The current gene is the representative for this cluster.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1292503
Simplified PFAM architecture for HKOC_1292503
PFAM domain coverage: 224 / 550 aa (40.7%)
1 aa550 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[225-277] | HisKA[332-396] | HATPase_c[443-548]
- Domain count: 3
- Matched identifier: HKOC_1292503
- Positioned domains: PAS_8 225-277 ; HisKA 332-396 ; HATPase_c 443-548
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS08545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key