1 PAS_9#1
104-201 aa · 98 aa · 21.8% of protein
Raw token
PAS_9:104:0.000000221:201:104:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS06880
Histidine kinase, Classic
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS06880Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage277 / 450 aa (61.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
208-274 aa · 67 aa · 14.9% of protein
Raw token
HisKA:208:1.5e-16:274:67:643 HATPase_c#3
326-437 aa · 112 aa · 24.9% of protein
Raw token
HATPase_c:326:1.26e-34:437:112:109- Raw architecture: PAS_9:104:0.000000221:201:104:102#HisKA:208:1.5e-16:274:67:64#HATPase_c:326:1.26e-34:437:112:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1446700-1448755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_1435RefSeq proteinWP_003065768.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00011Context members
HMPREF9319_RS06880HMPREF9319_RS06885
Partner locus tags
HMPREF9319_RS06880HMPREF9319_RS06885
Partner old locus tags
HMPREF9319_1435HMPREF9319_1436
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003065768.1Primary protein accession used for annex mappings.
UniProt accessionE0PF12Primary UniProt accession resolved in the annex database.
UniProt IDE0PF12_STREIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS06880Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_1435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval1 446 700-1 448 052 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 446 700-1 448 755 ntGCF_000146405::NZ_GL397128.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span1 446 700-1 448 755 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 446 700 nt1 448 755 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS06880GCF_000146405#HMPREF9319_RS06880
HKClassicCurrent focus
1 446 700-1 448 052 nt · Reverse (-)
HMPREF9319_RS06885GCF_000146405#HMPREF9319_RS06885
RROmpR
1 448 045-1 448 755 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS06880The current gene is the representative for this cluster.
PFAM architectureCovS-like_HAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1962134
Simplified PFAM architecture for HKOC_1962134
PFAM domain coverage: 326 / 450 aa (72.4%)
1 aa450 aa
CovS-like_HAMPPASHisKAHATPase_c
- Simplified architecture: CovS-like_HAMP + PAS + HisKA + HATPase_c
- Raw architecture: CovS-like_HAMP[32-86] | PAS[95-189] | HisKA[209-273] | HATPase_c[326-436]
- Domain count: 4
- Matched identifier: HKOC_1962134
- Positioned domains: CovS-like_HAMP 32-86 ; PAS 95-189 ; HisKA 209-273 ; HATPase_c 326-436
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS06880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key