1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.3e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9319_RS04885
Response regulator OmpR family
Streptococcus equinus ATCC 700338 · GCF_000146405
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000146405#HMPREF9319_RS04885Stable P2CS identifier used across views.
GenomeGCF_000146405Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:3.84e-24:220:77:77- Raw architecture: Response_reg:4:1.3e-29:113:111:111#Trans_reg_C:145:3.84e-24:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000146405::NZ_GL397128.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1018569-1020573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9319_1008RefSeq proteinWP_003064882.1
Context group ID
GCF_000146405::NZ_GL397128.1::G00009Context members
HMPREF9319_RS04880HMPREF9319_RS04885
Partner locus tags
HMPREF9319_RS04880HMPREF9319_RS04885
Partner old locus tags
HMPREF9319_1007HMPREF9319_1008
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003064882.1Primary protein accession used for annex mappings.
UniProt accessionE0PDT5Primary UniProt accession resolved in the annex database.
UniProt IDE0PDT5_STREIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9319_RS04885Primary locus identifier stored in the genes table.
Old locus tagHMPREF9319_1008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL397128.1Sequence record reported by the local genomic context database.
Genomic interval1 019 899-1 020 573 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 018 569-1 020 573 ntGCF_000146405::NZ_GL397128.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000146405::NZ_GL397128.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL397128.1All displayed genes belong to this local TCS context.
Neighborhood span1 018 569-1 020 573 nt2 005 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 018 569 nt1 020 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9319_RS04880GCF_000146405#HMPREF9319_RS04880
HKClassic
1 018 569-1 019 909 nt · Reverse (-)
HMPREF9319_RS04885GCF_000146405#HMPREF9319_RS04885
RROmpRCurrent focus
1 019 899-1 020 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000146405#HMPREF9319_RS04885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528997
Simplified PFAM architecture for RROC_1528997
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1528997
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_000146405#HMPREF9319_RS04885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 864 569 · GCF_000146405
AssemblyASM14640v1 · Scaffoldhaploid
Genome composition2 083 084 bp · 37,0% GCStreptococcus equinus ATCC 700338
Signal transduction countsGenes 30 · HK 14 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key