1 Response_reg#1
4-114 aa · 111 aa · 56.6% of protein
Raw token
Response_reg:4:6.63e-20:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAK_RS01890
Response regulator NarL family
Streptococcus agalactiae A909 · GCF_000012705
ClassRRTypeNarLLength196 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000012705#SAK_RS01890Stable P2CS identifier used across views.
GenomeGCF_000012705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length196 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 196 aa (85.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa196 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-190 aa · 56 aa · 28.6% of protein
Raw token
HTH_LUXR:135:3.25e-21:190:56:58- Raw architecture: Response_reg:4:6.63e-20:114:112:111#HTH_LUXR:135:3.25e-21:190:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000012705::NC_007432.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329082-330759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAK_0381RefSeq proteinWP_000772050.1
Context group ID
GCF_000012705::NC_007432.1::G00004Context members
SAK_RS01885SAK_RS01890
Partner locus tags
SAK_RS01885SAK_RS01890
Partner old locus tags
SAK_0380SAK_0381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000772050.1Primary protein accession used for annex mappings.
UniProt accessionQ8E758Primary UniProt accession resolved in the annex database.
UniProt IDQ8E758_STRA3Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAK_RS01890Primary locus identifier stored in the genes table.
Old locus tagSAK_0381Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007432.1Sequence record reported by the local genomic context database.
Genomic interval330 169-330 759 nt591 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span329 082-330 759 ntGCF_000012705::NC_007432.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000012705::NC_007432.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007432.1All displayed genes belong to this local TCS context.
Neighborhood span329 082-330 759 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 082 nt330 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAK_RS01885GCF_000012705#SAK_RS01885
HKClassic
329 082-330 167 nt · Forward (+)
SAK_RS01890GCF_000012705#SAK_RS01890
RRNarLCurrent focus
330 169-330 759 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000012705#SAK_RS01890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2154843
Simplified PFAM architecture for RROC_2154843
PFAM domain coverage: 165 / 196 aa (84.2%)
1 aa196 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-113] | GerE[135-189]
- Domain count: 2
- Matched identifier: RROC_2154843
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; GerE 135-189 ; GerE 135-189
Cluster members and taxonomy
Representative gene: GCF_000012705#SAK_RS01890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 205 921 · GCF_000012705
AssemblyASM1270v1 · Complete Genomehaploid
Genome composition2 127 839 bp · 35,5% GCStreptococcus agalactiae A909
Signal transduction countsGenes 40 · HK 19 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key