1 HisKA_3#1
174-238 aa · 65 aa · 18.0% of protein
Raw token
HisKA_3:174:9.76e-22:238:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAK_RS01885
Histidine kinase, Classic
Streptococcus agalactiae A909 · GCF_000012705
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000012705#SAK_RS01885Stable P2CS identifier used across views.
GenomeGCF_000012705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage131 / 361 aa (36.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
279-344 aa · 66 aa · 18.3% of protein
Raw token
HATPase_c:279:0.0000000285:344:66:109- Raw architecture: HisKA_3:174:9.76e-22:238:65:68#HATPase_c:279:0.0000000285:344:66:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000012705::NC_007432.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329082-330759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAK_0380RefSeq proteinWP_000791349.1
Context group ID
GCF_000012705::NC_007432.1::G00004Context members
SAK_RS01885SAK_RS01890
Partner locus tags
SAK_RS01885SAK_RS01890
Partner old locus tags
SAK_0380SAK_0381
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000791349.1Primary protein accession used for annex mappings.
UniProt accessionQ8E1P3Primary UniProt accession resolved in the annex database.
UniProt IDQ8E1P3_STRA5Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAK_RS01885Primary locus identifier stored in the genes table.
Old locus tagSAK_0380Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007432.1Sequence record reported by the local genomic context database.
Genomic interval329 082-330 167 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span329 082-330 759 ntGCF_000012705::NC_007432.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000012705::NC_007432.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007432.1All displayed genes belong to this local TCS context.
Neighborhood span329 082-330 759 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 082 nt330 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAK_RS01885GCF_000012705#SAK_RS01885
HKClassicCurrent focus
329 082-330 167 nt · Forward (+)
SAK_RS01890GCF_000012705#SAK_RS01890
RRNarL
330 169-330 759 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS04310Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2740506
Simplified PFAM architecture for HKOC_2740506
PFAM domain coverage: 65 / 361 aa (18.0%)
1 aa361 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[174-238]
- Domain count: 1
- Matched identifier: HKOC_2740506
- Positioned domains: HisKA_3 174-238
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS04310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 205 921 · GCF_000012705
AssemblyASM1270v1 · Complete Genomehaploid
Genome composition2 127 839 bp · 35,5% GCStreptococcus agalactiae A909
Signal transduction countsGenes 40 · HK 19 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key