1 Response_reg#1
3-109 aa · 107 aa · 43.5% of protein
Raw token
Response_reg:3:1.32e-20:109:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAK_RS01225
Response regulator LytTR family
Streptococcus agalactiae A909 · GCF_000012705
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000012705#SAK_RS01225Stable P2CS identifier used across views.
GenomeGCF_000012705Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 246 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
148-244 aa · 97 aa · 39.4% of protein
Raw token
LytTR:148:2.65e-32:244:97:98- Raw architecture: Response_reg:3:1.32e-20:109:109:111#LytTR:148:2.65e-32:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000012705::NC_007432.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span210781-213247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAK_0249RefSeq proteinWP_000697630.1
Context group ID
GCF_000012705::NC_007432.1::G00003Context members
SAK_RS01220SAK_RS01225
Partner locus tags
SAK_RS01220SAK_RS01225
Partner old locus tags
SAK_0248SAK_0249
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000697630.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3JM49Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3JM49_STRAGDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAK_RS01225Primary locus identifier stored in the genes table.
Old locus tagSAK_0249Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007432.1Sequence record reported by the local genomic context database.
Genomic interval212 507-213 247 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span210 781-213 247 ntGCF_000012705::NC_007432.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000012705::NC_007432.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007432.1All displayed genes belong to this local TCS context.
Neighborhood span210 781-213 247 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
210 781 nt213 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAK_RS01220GCF_000012705#SAK_RS01220
HKClassic
210 781-212 526 nt · Forward (+)
SAK_RS01225GCF_000012705#SAK_RS01225
RRLytTRCurrent focus
212 507-213 247 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS03645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0769182
Simplified PFAM architecture for RROC_0769182
PFAM domain coverage: 205 / 246 aa (83.3%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[149-244]
- Domain count: 2
- Matched identifier: RROC_0769182
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 149-244 ; LytTR 149-244
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS03645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 205 921 · GCF_000012705
AssemblyASM1270v1 · Complete Genomehaploid
Genome composition2 127 839 bp · 35,5% GCStreptococcus agalactiae A909
Signal transduction countsGenes 40 · HK 19 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key