1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:9.17e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPR_RS00415
Response regulator OmpR family
Streptococcus pneumoniae R6 · GCF_000007045
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007045#SPR_RS00415Stable P2CS identifier used across views.
GenomeGCF_000007045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:149:4.36e-27:225:77:77- Raw architecture: Response_reg:5:9.17e-34:114:110:111#Trans_reg_C:149:4.36e-27:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007045::NC_003098.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83838-85585Genomic interval covered by the local TCS group.
Identifiers
Old locus tagspr0076RefSeq proteinWP_000520636.1
Context group ID
GCF_000007045::NC_003098.1::G00001Context members
SPR_RS00415SPR_RS00420
Partner locus tags
SPR_RS00415SPR_RS00420
Partner old locus tags
spr0076spr0077
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000520636.1Primary protein accession used for annex mappings.
UniProt accessionQ8DRK1Primary UniProt accession resolved in the annex database.
UniProt IDQ8DRK1_STRR6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPR_RS00415Primary locus identifier stored in the genes table.
Old locus tagspr0076Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003098.1Sequence record reported by the local genomic context database.
Genomic interval83 838-84 536 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 838-85 585 ntGCF_000007045::NC_003098.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007045::NC_003098.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003098.1All displayed genes belong to this local TCS context.
Neighborhood span83 838-85 585 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 838 nt85 585 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPR_RS00415GCF_000007045#SPR_RS00415
RROmpRCurrent focus
83 838-84 536 nt · Forward (+)
SPR_RS00420GCF_000007045#SPR_RS00420
HKClassic
84 533-85 585 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007045#SPR_RS00415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119304
Simplified PFAM architecture for RROC_1119304
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1119304
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_000007045#SPR_RS00415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 171 101 · GCF_000007045
AssemblyASM704v1 · Complete Genomehaploid
Genome composition2 038 615 bp · 39,5% GCStreptococcus pneumoniae R6
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key