1 Response_reg#1
3-114 aa · 112 aa · 53.3% of protein
Raw token
Response_reg:3:2.79e-28:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPR_RS01785
Response regulator NarL family
Streptococcus pneumoniae R6 · GCF_000007045
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007045#SPR_RS01785Stable P2CS identifier used across views.
GenomeGCF_000007045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 210 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
142-199 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:142:2.04e-24:199:58:58- Raw architecture: Response_reg:3:2.79e-28:114:112:111#HTH_LUXR:142:2.04e-24:199:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007045::NC_003098.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span347668-349309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagspr0344RefSeq proteinWP_000698434.1
Context group ID
GCF_000007045::NC_003098.1::G00004Context members
SPR_RS01780SPR_RS01785
Partner locus tags
SPR_RS01780SPR_RS01785
Partner old locus tags
spr0343spr0344
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000698434.1Primary protein accession used for annex mappings.
UniProt accessionC1C5C6Primary UniProt accession resolved in the annex database.
UniProt IDC1C5C6_STRP7Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPR_RS01785Primary locus identifier stored in the genes table.
Old locus tagspr0344Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003098.1Sequence record reported by the local genomic context database.
Genomic interval348 677-349 309 nt633 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span347 668-349 309 ntGCF_000007045::NC_003098.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007045::NC_003098.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003098.1All displayed genes belong to this local TCS context.
Neighborhood span347 668-349 309 nt1 642 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
347 668 nt349 309 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPR_RS01780GCF_000007045#SPR_RS01780
HKClassic
347 668-348 663 nt · Forward (+)
SPR_RS01785GCF_000007045#SPR_RS01785
RRNarLCurrent focus
348 677-349 309 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006885#SP_RS01900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018830
Simplified PFAM architecture for RROC_2018830
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-114] | GerE[144-199]
- Domain count: 2
- Matched identifier: RROC_2018830
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; GerE 144-199 ; GerE 144-199
Cluster members and taxonomy
Representative gene: GCF_000006885#SP_RS01900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 171 101 · GCF_000007045
AssemblyASM704v1 · Complete Genomehaploid
Genome composition2 038 615 bp · 39,5% GCStreptococcus pneumoniae R6
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key