1 Response_reg#1
6-115 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:6:2.98e-22:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESRS_RS01270
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_964252135
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964252135#ACESRS_RS01270Stable P2CS identifier used across views.
GenomeGCF_964252135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:149:3.31e-29:222:75:77- Raw architecture: Response_reg:6:2.98e-22:115:111:111#Trans_reg_C:149:3.31e-29:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964252135::NZ_CAXUME010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span261496-262173Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964252135::NZ_CAXUME010000001.1::G00005Context members
ACESRS_RS01270
Partner locus tags
ACESRS_RS01270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_373196209.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESRS_RS01270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXUME010000001.1Sequence record reported by the local genomic context database.
Genomic interval261 496-262 173 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span261 496-262 173 ntGCF_964252135::NZ_CAXUME010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964252135::NZ_CAXUME010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXUME010000001.1All displayed genes belong to this local TCS context.
Neighborhood span261 496-262 173 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
261 496 nt262 173 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACESRS_RS01270GCF_964252135#ACESRS_RS01270
RROmpRCurrent focus
261 496-262 173 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964252135#ACESRS_RS01270The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528436
Simplified PFAM architecture for RROC_1528436
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1528436
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_964252135#ACESRS_RS01270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964252135
AssemblyCC00895 · Scaffoldhaploid
Genome composition3 674 922 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 43 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key