1 HisKA#1
193-254 aa · 62 aa · 15.2% of protein
Raw token
HisKA:193:0.000000000116:254:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESRS_RS01125
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_964252135
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964252135#ACESRS_RS01125Stable P2CS identifier used across views.
GenomeGCF_964252135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-405 aa · 100 aa · 24.4% of protein
Raw token
HATPase_c:306:4.18e-25:405:100:109- Raw architecture: HisKA:193:0.000000000116:254:62:64#HATPase_c:306:4.18e-25:405:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964252135::NZ_CAXUME010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span225790-227717Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964252135::NZ_CAXUME010000001.1::G00003Context members
ACESRS_RS01125ACESRS_RS01130
Partner locus tags
ACESRS_RS01125ACESRS_RS01130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117989109.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1B8U1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1B8U1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESRS_RS01125Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXUME010000001.1Sequence record reported by the local genomic context database.
Genomic interval225 790-227 019 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span225 790-227 717 ntGCF_964252135::NZ_CAXUME010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964252135::NZ_CAXUME010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXUME010000001.1All displayed genes belong to this local TCS context.
Neighborhood span225 790-227 717 nt1 928 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 790 nt227 717 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESRS_RS01125GCF_964252135#ACESRS_RS01125
HKClassicCurrent focus
225 790-227 019 nt · Reverse (-)
ACESRS_RS01130GCF_964252135#ACESRS_RS01130
RROmpR
227 016-227 717 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_040096555#WMO25_RS15025Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2367415
Simplified PFAM architecture for HKOC_2367415
PFAM domain coverage: 168 / 409 aa (41.1%)
1 aa409 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-254] | HATPase_c[302-405]
- Domain count: 2
- Matched identifier: HKOC_2367415
- Positioned domains: HisKA 191-254 ; HATPase_c 302-405
Cluster members and taxonomy
Representative gene: GCF_040096555#WMO25_RS15025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964252135
AssemblyCC00895 · Scaffoldhaploid
Genome composition3 674 922 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 43 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key