1 Response_reg#1
4-100 aa · 97 aa · 80.2% of protein
Raw token
Response_reg:4:0.000000000000197:100:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESRS_RS01110
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_964252135
ClassRRTypeCheYLength121 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964252135#ACESRS_RS01110Stable P2CS identifier used across views.
GenomeGCF_964252135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length121 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage97 / 121 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa121 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000197:100:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964252135::NZ_CAXUME010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span222181-222546Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964252135::NZ_CAXUME010000001.1::G00002Context members
ACESRS_RS01110
Partner locus tags
ACESRS_RS01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117989106.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1B889Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1B889_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESRS_RS01110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXUME010000001.1Sequence record reported by the local genomic context database.
Genomic interval222 181-222 546 nt366 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span222 181-222 546 ntGCF_964252135::NZ_CAXUME010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964252135::NZ_CAXUME010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXUME010000001.1All displayed genes belong to this local TCS context.
Neighborhood span222 181-222 546 nt366 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
222 181 nt222 546 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACESRS_RS01110GCF_964252135#ACESRS_RS01110
RRCheYCurrent focus
222 181-222 546 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033539515#NOBGBDLN_RS00160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2429852
Simplified PFAM architecture for RROC_2429852
PFAM domain coverage: 92 / 121 aa (76.0%)
1 aa121 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-95]
- Domain count: 1
- Matched identifier: RROC_2429852
- Positioned domains: Response_reg 4-95
Cluster members and taxonomy
Representative gene: GCF_033539515#NOBGBDLN_RS00160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964252135
AssemblyCC00895 · Scaffoldhaploid
Genome composition3 674 922 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 43 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key