1 PAS_3#1
238-296 aa · 59 aa · 6.9% of protein
Raw token
PAS_3:238:0.000000000403:296:59:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q5Q95_RS01660
Histidine kinase, Hybrid
Anaerofustis stercorihominis · GCF_959026055
ClassHKTypeHybridLength861 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_959026055#Q5Q95_RS01660Stable P2CS identifier used across views.
GenomeGCF_959026055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length861 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage480 / 861 aa (55.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa861 aa
Domain-by-domain annotation5 items
2 HisKA#2
351-417 aa · 67 aa · 7.8% of protein
Raw token
HisKA:351:4.62e-18:417:67:643 HATPase_c#3
464-582 aa · 119 aa · 13.8% of protein
Raw token
HATPase_c:464:4.85e-31:582:119:1094 Response_reg#4
598-714 aa · 117 aa · 13.6% of protein
Raw token
Response_reg:598:3.35e-23:714:117:1115 Response_reg#5
740-857 aa · 118 aa · 13.7% of protein
Raw token
Response_reg:740:1.42e-27:857:118:111- Raw architecture: PAS_3:238:0.000000000403:296:59:89#HisKA:351:4.62e-18:417:67:64#HATPase_c:464:4.85e-31:582:119:109#Response_reg:598:3.35e-23:714:117:111#Response_reg:740:1.42e-27:857:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_959026055::NZ_CAUFKS010000008.1::G00003
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span14007-18755Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_959026055::NZ_CAUFKS010000008.1::G00003Context members
Q5Q95_RS01660Q5Q95_RS01665
Partner locus tags
Q5Q95_RS01660Q5Q95_RS01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_367881929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ5Q95_RS01660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUFKS010000008.1Sequence record reported by the local genomic context database.
Genomic interval14 007-16 592 nt2 586 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 007-18 755 ntGCF_959026055::NZ_CAUFKS010000008.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_959026055::NZ_CAUFKS010000008.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUFKS010000008.1All displayed genes belong to this local TCS context.
Neighborhood span14 007-18 755 nt4 749 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 007 nt18 755 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q5Q95_RS01660GCF_959026055#Q5Q95_RS01660
HKHybridCurrent focus
14 007-16 592 nt · Reverse (-)
Q5Q95_RS01665GCF_959026055#Q5Q95_RS01665
HKHybrid
16 980-18 755 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_959026055#Q5Q95_RS01660The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0471446
Simplified PFAM architecture for HKOC_0471446
PFAM domain coverage: 479 / 861 aa (55.6%)
1 aa861 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[237-298] | HisKA[351-417] | HATPase_c[465-581] | Response_reg[598-713] | Response_reg[740-856]
- Domain count: 5
- Matched identifier: HKOC_0471446
- Positioned domains: PAS_3 237-298 ; HisKA 351-417 ; HATPase_c 465-581 ; Response_reg 598-713 ; Response_reg 740-856
Cluster members and taxonomy
Representative gene: GCF_959026055#Q5Q95_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_959026055
AssemblyERR10149264_bin.1_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition2 142 561 bp · 33,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 36 · HK 22 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key