1 GGDEF#1
261-408 aa · 148 aa · 26.6% of protein
Raw token
GGDEF:261:9.88e-41:408:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q5Q95_RS01165
Response regulator, PleD family
Anaerofustis stercorihominis · GCF_959026055
ClassRRTypePleDLength556 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_959026055#Q5Q95_RS01165Stable P2CS identifier used across views.
GenomeGCF_959026055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_reg
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage253 / 556 aa (45.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation2 items
2 Response_reg#2
436-540 aa · 105 aa · 18.9% of protein
Raw token
Response_reg:436:1.21e-23:540:108:111- Raw architecture: GGDEF:261:9.88e-41:408:157:160#Response_reg:436:1.21e-23:540:108:111
- Domain description: 1 GGDEF,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_959026055::NZ_CAUFKS010000005.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25024-26694Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_959026055::NZ_CAUFKS010000005.1::G00002Context members
Q5Q95_RS01165
Partner locus tags
Q5Q95_RS01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302826194.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ5Q95_RS01165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAUFKS010000005.1Sequence record reported by the local genomic context database.
Genomic interval25 024-26 694 nt1 671 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 024-26 694 ntGCF_959026055::NZ_CAUFKS010000005.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_959026055::NZ_CAUFKS010000005.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAUFKS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span25 024-26 694 nt1 671 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 024 nt26 694 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q5Q95_RS01165GCF_959026055#Q5Q95_RS01165
RRPleDCurrent focus
25 024-26 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_959026055#Q5Q95_RS01165The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0066522
Simplified PFAM architecture for RROC_0066522
PFAM domain coverage: 257 / 556 aa (46.2%)
1 aa556 aa
GGDEFResponse_reg
- Simplified architecture: GGDEF + Response_reg
- Raw architecture: GGDEF[260-407] | Response_reg[436-544]
- Domain count: 2
- Matched identifier: RROC_0066522
- Positioned domains: GGDEF 260-407 ; Response_reg 436-544
Cluster members and taxonomy
Representative gene: GCF_959026055#Q5Q95_RS01165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 214 853 · GCF_959026055
AssemblyERR10149264_bin.1_MetaWRAP_v1.3_MAG · Contighaploid
Genome composition2 142 561 bp · 33,0% GCAnaerofustis stercorihominis
Signal transduction countsGenes 36 · HK 22 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key