1 HisKA#1
212-275 aa · 64 aa · 14.9% of protein
Raw token
HisKA:212:0.00000000000000151:275:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NW138_RS10315
Histidine kinase, Classic
Neglectibacter timonensis · GCF_905200465
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_905200465#NW138_RS10315Stable P2CS identifier used across views.
GenomeGCF_905200465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 430 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
324-430 aa · 107 aa · 24.9% of protein
Raw token
HATPase_c:324:3.46e-28:430:107:109- Raw architecture: HisKA:212:0.00000000000000151:275:64:64#HATPase_c:324:3.46e-28:430:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_905200465::NZ_CAJKKG010000041.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16440-18405Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905200465::NZ_CAJKKG010000041.1::G00041Context members
NW138_RS10310NW138_RS10315
Partner locus tags
NW138_RS10310NW138_RS10315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082942210.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNW138_RS10315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJKKG010000041.1Sequence record reported by the local genomic context database.
Genomic interval17 113-18 405 nt1 293 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 440-18 405 ntGCF_905200465::NZ_CAJKKG010000041.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905200465::NZ_CAJKKG010000041.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJKKG010000041.1All displayed genes belong to this local TCS context.
Neighborhood span16 440-18 405 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 440 nt18 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NW138_RS10310GCF_905200465#NW138_RS10310
RROmpR
16 440-17 126 nt · Forward (+)
NW138_RS10315GCF_905200465#NW138_RS10315
HKClassicCurrent focus
17 113-18 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_905200465#NW138_RS10315The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180014
Simplified PFAM architecture for HKOC_2180014
PFAM domain coverage: 168 / 430 aa (39.1%)
1 aa430 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[213-275] | HATPase_c[324-428]
- Domain count: 2
- Matched identifier: HKOC_2180014
- Positioned domains: HisKA 213-275 ; HATPase_c 324-428
Cluster members and taxonomy
Representative gene: GCF_905200465#NW138_RS10315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_905200465
AssemblyERR1600710-mag-bin.28 · Contighaploid
Genome composition3 428 600 bp · 53,0% GCNeglectibacter timonensis
Signal transduction countsGenes 102 · HK 52 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key