1 Response_reg#1
4-115 aa · 112 aa · 21.1% of protein
Raw token
Response_reg:4:1.09e-20:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NW138_RS00855
Response regulator, unclassified
Neglectibacter timonensis · GCF_905200465
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_905200465#NW138_RS00855Stable P2CS identifier used across views.
GenomeGCF_905200465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Neglectibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 532 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-469 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:431:0.00000195:469:39:423 HTH_AraC#3
481-519 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:481:0.00000000233:519:39:42- Raw architecture: Response_reg:4:1.09e-20:115:112:111#HTH_AraC:431:0.00000195:469:39:42#HTH_AraC:481:0.00000000233:519:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_905200465::NZ_CAJKKG010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8272-11602Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_905200465::NZ_CAJKKG010000002.1::G00004Context members
NW138_RS00855NW138_RS00860
Partner locus tags
NW138_RS00855NW138_RS00860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_066862988.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNW138_RS00855Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAJKKG010000002.1Sequence record reported by the local genomic context database.
Genomic interval8 272-9 870 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 272-11 602 ntGCF_905200465::NZ_CAJKKG010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_905200465::NZ_CAJKKG010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAJKKG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span8 272-11 602 nt3 331 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 272 nt11 602 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NW138_RS00855GCF_905200465#NW138_RS00855
RRunclassifiedCurrent focus
8 272-9 870 nt · Reverse (-)
NW138_RS00860GCF_905200465#NW138_RS00860
HKClassic
9 848-11 602 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900048895#BN3911_RS06465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109408
Simplified PFAM architecture for RROC_0109408
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[441-519]
- Domain count: 2
- Matched identifier: RROC_0109408
- Positioned domains: Response_reg 4-115 ; HTH_18 441-519
Cluster members and taxonomy
Representative gene: GCF_900048895#BN3911_RS06465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 382 · GCF_905200465
AssemblyERR1600710-mag-bin.28 · Contighaploid
Genome composition3 428 600 bp · 53,0% GCNeglectibacter timonensis
Signal transduction countsGenes 102 · HK 52 · RR 47CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusNeglectibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Neglectibacter
Related genes
Preview from the same derived genome key