1 HisKA#1
828-893 aa · 66 aa · 4.8% of protein
Raw token
HisKA:828:0.0000000000000983:893:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS08740
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1367 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS08740Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1367 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage327 / 1367 aa (23.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1367 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
947-1059 aa · 113 aa · 8.3% of protein
Raw token
HATPase_c:947:1.2e-22:1059:113:1093 Response_reg#3
1115-1226 aa · 112 aa · 8.2% of protein
Raw token
Response_reg:1115:1.59e-29:1226:113:1114 HTH_AraC#4
1326-1361 aa · 36 aa · 2.6% of protein
Raw token
HTH_AraC:1326:0.00000204:1361:36:42- Raw architecture: HisKA:828:0.0000000000000983:893:67:64#HATPase_c:947:1.2e-22:1059:113:109#Response_reg:1115:1.59e-29:1226:113:111#HTH_AraC:1326:0.00000204:1361:36:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000010.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span157859-161962Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000010.1::G00039Context members
RDP95_RS08740
Partner locus tags
RDP95_RS08740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294608735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS08740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000010.1Sequence record reported by the local genomic context database.
Genomic interval157 859-161 962 nt4 104 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157 859-161 962 ntGCF_902472515::NZ_CABROB010000010.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000010.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000010.1All displayed genes belong to this local TCS context.
Neighborhood span157 859-161 962 nt4 104 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 859 nt161 962 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS08740GCF_902472515#RDP95_RS08740
HKHybridCurrent focus
157 859-161 962 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS08740The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0083621
Simplified PFAM architecture for HKOC_0083621
PFAM domain coverage: 530 / 1367 aa (38.8%)
1 aa1367 aa
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[36-57] | Reg_prop[215-235] | Reg_prop[353-373] | Reg_prop[400-418] | Reg_prop[577-599] | Y_Y_Y[716-768] | HisKA[828-893] | HATPase_c[945-1059] | Response_reg[1115-1225] | HTH_18[1283-1361]
- Domain count: 10
- Matched identifier: HKOC_0083621
- Positioned domains: Reg_prop 36-57 ; Reg_prop 215-235 ; Reg_prop 353-373 ; Reg_prop 400-418 ; Reg_prop 577-599 ; Y_Y_Y 716-768 ; HisKA 828-893 ; HATPase_c 945-1059 ; Response_reg 1115-1225 ; HTH_18 1283-1361
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS08740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key