1 HisKA#1
828-893 aa · 66 aa · 4.8% of protein
Raw token
HisKA:828:0.000000000000371:893:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS08685
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1361 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS08685Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length1361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 1361 aa (21.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1361 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
940-1050 aa · 111 aa · 8.2% of protein
Raw token
HATPase_c:940:4.5e-28:1050:111:1093 Response_reg#3
1098-1208 aa · 111 aa · 8.2% of protein
Raw token
Response_reg:1098:7.86e-32:1208:112:111- Raw architecture: HisKA:828:0.000000000000371:893:66:64#HATPase_c:940:4.5e-28:1050:111:109#Response_reg:1098:7.86e-32:1208:112:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000010.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span133851-137936Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000010.1::G00038Context members
RDP95_RS08685
Partner locus tags
RDP95_RS08685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294608757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS08685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000010.1Sequence record reported by the local genomic context database.
Genomic interval133 851-137 936 nt4 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span133 851-137 936 ntGCF_902472515::NZ_CABROB010000010.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000010.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000010.1All displayed genes belong to this local TCS context.
Neighborhood span133 851-137 936 nt4 086 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 851 nt137 936 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS08685GCF_902472515#RDP95_RS08685
HKHybridCurrent focus
133 851-137 936 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS08685The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1811 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0087396
Simplified PFAM architecture for HKOC_0087396
PFAM domain coverage: 556 / 1361 aa (40.9%)
1 aa1361 aa
Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[32-54] | Reg_prop[167-188] | Reg_prop[397-415] | Reg_prop[443-461] | Reg_prop[537-558] | Reg_prop[579-601] | Y_Y_Y[718-777] | HisKA[828-893] | HATPase_c[940-1051] | Response_reg[1098-1208] | HTH_18[1266-1344]
- Domain count: 11
- Matched identifier: HKOC_0087396
- Positioned domains: Reg_prop 32-54 ; Reg_prop 167-188 ; Reg_prop 397-415 ; Reg_prop 443-461 ; Reg_prop 537-558 ; Reg_prop 579-601 ; Y_Y_Y 718-777 ; HisKA 828-893 ; HATPase_c 940-1051 ; Response_reg 1098-1208 ; HTH_18 1266-1344
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS08685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key