1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:2.15e-38:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS07640
Response regulator OmpR family
uncultured Bacteroides sp. · GCF_902472515
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902472515#RDP95_RS07640Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-228 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:154:1.04e-20:228:77:77- Raw architecture: Response_reg:6:2.15e-38:116:111:111#Trans_reg_C:154:1.04e-20:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902472515::NZ_CABROB010000009.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41730-43949Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000009.1::G00035Context members
RDP95_RS07640RDP95_RS07645
Partner locus tags
RDP95_RS07640RDP95_RS07645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS07640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000009.1Sequence record reported by the local genomic context database.
Genomic interval41 730-42 425 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 730-43 949 ntGCF_902472515::NZ_CABROB010000009.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000009.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000009.1All displayed genes belong to this local TCS context.
Neighborhood span41 730-43 949 nt2 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 730 nt43 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDP95_RS07640GCF_902472515#RDP95_RS07640
RROmpRCurrent focus
41 730-42 425 nt · Reverse (-)
RDP95_RS07645GCF_902472515#RDP95_RS07645
HKClassic
42 459-43 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS07640The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1197915
Simplified PFAM architecture for RROC_1197915
PFAM domain coverage: 182 / 231 aa (78.8%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[157-228]
- Domain count: 2
- Matched identifier: RROC_1197915
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 157-228
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS07640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key