1 HisKA#1
907-969 aa · 63 aa · 4.4% of protein
Raw token
HisKA:907:1.37e-16:969:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS06690
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1432 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS06690Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1432 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage314 / 1432 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1432 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
1020-1122 aa · 103 aa · 7.2% of protein
Raw token
HATPase_c:1020:1.3e-25:1122:104:1093 Response_reg#3
1174-1284 aa · 111 aa · 7.8% of protein
Raw token
Response_reg:1174:4.88e-27:1284:112:1114 HTH_AraC#4
1381-1417 aa · 37 aa · 2.6% of protein
Raw token
HTH_AraC:1381:0.000000839:1417:37:42- Raw architecture: HisKA:907:1.37e-16:969:63:64#HATPase_c:1020:1.3e-25:1122:104:109#Response_reg:1174:4.88e-27:1284:112:111#HTH_AraC:1381:0.000000839:1417:37:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000007.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span202765-207063Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000007.1::G00033Context members
RDP95_RS06690
Partner locus tags
RDP95_RS06690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS06690Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000007.1Sequence record reported by the local genomic context database.
Genomic interval202 765-207 063 nt4 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span202 765-207 063 ntGCF_902472515::NZ_CABROB010000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span202 765-207 063 nt4 299 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 765 nt207 063 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS06690GCF_902472515#RDP95_RS06690
HKHybridCurrent focus
202 765-207 063 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS06690The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1811 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0058992
Simplified PFAM architecture for HKOC_0058992
PFAM domain coverage: 555 / 1432 aa (38.8%)
1 aa1432 aa
Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[35-57] | Reg_prop[173-195] | Reg_prop[476-494] | Reg_prop[515-537] | Reg_prop[610-631] | Reg_prop[656-678] | Y_Y_Y[792-855] | HisKA[906-968] | HATPase_c[1018-1124] | Response_reg[1174-1282] | HTH_18[1339-1417]
- Domain count: 11
- Matched identifier: HKOC_0058992
- Positioned domains: Reg_prop 35-57 ; Reg_prop 173-195 ; Reg_prop 476-494 ; Reg_prop 515-537 ; Reg_prop 610-631 ; Reg_prop 656-678 ; Y_Y_Y 792-855 ; HisKA 906-968 ; HATPase_c 1018-1124 ; Response_reg 1174-1282 ; HTH_18 1339-1417
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS06690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key