1 PAS_9#1
30-135 aa · 106 aa · 20.8% of protein
Raw token
PAS_9:30:0.00000887:135:107:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS06635
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS06635Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_3HisKAHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 509 aa (72.3%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation4 items
2 PAS_3#2
168-253 aa · 86 aa · 16.9% of protein
Raw token
PAS_3:168:0.000000000684:253:87:893 HisKA#3
281-348 aa · 68 aa · 13.4% of protein
Raw token
HisKA:281:1.23e-17:348:68:644 HATPase_c#4
393-500 aa · 108 aa · 21.2% of protein
Raw token
HATPase_c:393:3.58e-30:500:109:109- Raw architecture: PAS_9:30:0.00000887:135:107:102#PAS_3:168:0.000000000684:253:87:89#HisKA:281:1.23e-17:348:68:64#HATPase_c:393:3.58e-30:500:109:109
- Domain description: 1 PAS_9,1 PAS_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000007.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span190229-191758Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000007.1::G00032Context members
RDP95_RS06635
Partner locus tags
RDP95_RS06635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757853.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS06635Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000007.1Sequence record reported by the local genomic context database.
Genomic interval190 229-191 758 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 229-191 758 ntGCF_902472515::NZ_CABROB010000007.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000007.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span190 229-191 758 nt1 530 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 229 nt191 758 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS06635GCF_902472515#RDP95_RS06635
HKClassicCurrent focus
190 229-191 758 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS06635The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1436377
Simplified PFAM architecture for HKOC_1436377
PFAM domain coverage: 259 / 509 aa (50.9%)
1 aa509 aa
PAS_3HisKAHATPase_c
- Simplified architecture: PAS_3 + HisKA + HATPase_c
- Raw architecture: PAS_3[169-253] | HisKA[281-347] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1436377
- Positioned domains: PAS_3 169-253 ; HisKA 281-347 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS06635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key