1 HisKA#1
924-988 aa · 65 aa · 4.5% of protein
Raw token
HisKA:924:0.00000000000000848:988:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS06270
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1451 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS06270Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1451 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage360 / 1451 aa (24.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1451 aa
Domain-by-domain annotation5 items
2 HATPase_c#2
1036-1146 aa · 111 aa · 7.6% of protein
Raw token
HATPase_c:1036:2.76e-29:1146:111:1093 Response_reg#3
1190-1301 aa · 112 aa · 7.7% of protein
Raw token
Response_reg:1190:7.8e-33:1301:113:1114 HTH_AraC#4
1361-1396 aa · 36 aa · 2.5% of protein
Raw token
HTH_AraC:1361:0.0000557:1396:36:425 HTH_AraC#5
1409-1444 aa · 36 aa · 2.5% of protein
Raw token
HTH_AraC:1409:0.000000189:1444:36:42- Raw architecture: HisKA:924:0.00000000000000848:988:65:64#HATPase_c:1036:2.76e-29:1146:111:109#Response_reg:1190:7.8e-33:1301:113:111#HTH_AraC:1361:0.0000557:1396:36:42#HTH_AraC:1409:0.000000189:1444:36:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000007.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span118369-122724Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000007.1::G00031Context members
RDP95_RS06270
Partner locus tags
RDP95_RS06270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294613994.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS06270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000007.1Sequence record reported by the local genomic context database.
Genomic interval118 369-122 724 nt4 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 369-122 724 ntGCF_902472515::NZ_CABROB010000007.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000007.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span118 369-122 724 nt4 356 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 369 nt122 724 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS06270GCF_902472515#RDP95_RS06270
HKHybridCurrent focus
118 369-122 724 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS06270The current gene is the representative for this cluster.
PFAM architectureReg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_186 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0055661
Simplified PFAM architecture for HKOC_0055661
PFAM domain coverage: 452 / 1451 aa (31.2%)
1 aa1451 aa
Reg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[535-557] | Y_Y_Y[812-876] | HisKA[924-988] | HATPase_c[1036-1145] | Response_reg[1190-1301] | HTH_18[1369-1445]
- Domain count: 6
- Matched identifier: HKOC_0055661
- Positioned domains: Reg_prop 535-557 ; Y_Y_Y 812-876 ; HisKA 924-988 ; HATPase_c 1036-1145 ; Response_reg 1190-1301 ; HTH_18 1369-1445
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS06270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key