1 HisKA#1
805-869 aa · 65 aa · 5.0% of protein
Raw token
HisKA:805:0.0000128:869:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS05475
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1306 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS05475Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1306 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage327 / 1306 aa (25.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1306 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
918-1030 aa · 113 aa · 8.7% of protein
Raw token
HATPase_c:918:8.84e-28:1030:113:1093 Response_reg#3
1056-1166 aa · 111 aa · 8.5% of protein
Raw token
Response_reg:1056:4.94e-28:1166:112:1114 HTH_AraC#4
1262-1299 aa · 38 aa · 2.9% of protein
Raw token
HTH_AraC:1262:0.000000511:1299:38:42- Raw architecture: HisKA:805:0.0000128:869:65:64#HATPase_c:918:8.84e-28:1030:113:109#Response_reg:1056:4.94e-28:1166:112:111#HTH_AraC:1262:0.000000511:1299:38:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000006.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span103855-107775Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000006.1::G00028Context members
RDP95_RS05475
Partner locus tags
RDP95_RS05475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294605563.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS05475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000006.1Sequence record reported by the local genomic context database.
Genomic interval103 855-107 775 nt3 921 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 855-107 775 ntGCF_902472515::NZ_CABROB010000006.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000006.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span103 855-107 775 nt3 921 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 855 nt107 775 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS05475GCF_902472515#RDP95_RS05475
HKHybridCurrent focus
103 855-107 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS05475The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HATPase_c + Response_reg + HTH_186 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0122553
Simplified PFAM architecture for HKOC_0122553
PFAM domain coverage: 388 / 1306 aa (29.7%)
1 aa1306 aa
Reg_propReg_propY_Y_YHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[121-140] | Reg_prop[290-312] | Y_Y_Y[695-741] | HATPase_c[918-1029] | Response_reg[1056-1166] | HTH_18[1225-1299]
- Domain count: 6
- Matched identifier: HKOC_0122553
- Positioned domains: Reg_prop 121-140 ; Reg_prop 290-312 ; Y_Y_Y 695-741 ; HATPase_c 918-1029 ; Response_reg 1056-1166 ; HTH_18 1225-1299
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS05475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key