1 HisKA#1
269-332 aa · 64 aa · 8.2% of protein
Raw token
HisKA:269:0.00000000000288:332:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS05225
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength783 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS05225Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length783 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 783 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa783 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
382-498 aa · 117 aa · 14.9% of protein
Raw token
HATPase_c:382:1.22e-31:498:117:1093 Response_reg#3
536-649 aa · 114 aa · 14.6% of protein
Raw token
Response_reg:536:3.13e-22:649:115:111- Raw architecture: HisKA:269:0.00000000000288:332:64:64#HATPase_c:382:1.22e-31:498:117:109#Response_reg:536:3.13e-22:649:115:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000006.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27754-30105Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000006.1::G00027Context members
RDP95_RS05225
Partner locus tags
RDP95_RS05225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294608655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS05225Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000006.1Sequence record reported by the local genomic context database.
Genomic interval27 754-30 105 nt2 352 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 754-30 105 ntGCF_902472515::NZ_CABROB010000006.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000006.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span27 754-30 105 nt2 352 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 754 nt30 105 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS05225GCF_902472515#RDP95_RS05225
HKHybridCurrent focus
27 754-30 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS05225The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0590226
Simplified PFAM architecture for HKOC_0590226
PFAM domain coverage: 292 / 783 aa (37.3%)
1 aa783 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[270-332] | HATPase_c[382-497] | Response_reg[536-648]
- Domain count: 3
- Matched identifier: HKOC_0590226
- Positioned domains: HisKA 270-332 ; HATPase_c 382-497 ; Response_reg 536-648
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS05225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key