1 HisKA#1
889-954 aa · 66 aa · 4.7% of protein
Raw token
HisKA:889:0.00000000000000516:954:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS04815
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1399 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS04815Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1399 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage326 / 1399 aa (23.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1399 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
1001-1110 aa · 110 aa · 7.9% of protein
Raw token
HATPase_c:1001:1.17e-21:1110:111:1093 Response_reg#3
1154-1264 aa · 111 aa · 7.9% of protein
Raw token
Response_reg:1154:1.46e-32:1264:112:1114 HTH_AraC#4
1360-1398 aa · 39 aa · 2.8% of protein
Raw token
HTH_AraC:1360:0.00000000251:1398:39:42- Raw architecture: HisKA:889:0.00000000000000516:954:66:64#HATPase_c:1001:1.17e-21:1110:111:109#Response_reg:1154:1.46e-32:1264:112:111#HTH_AraC:1360:0.00000000251:1398:39:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000005.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span158630-162829Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000005.1::G00024Context members
RDP95_RS04815
Partner locus tags
RDP95_RS04815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757838.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS04815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000005.1Sequence record reported by the local genomic context database.
Genomic interval158 630-162 829 nt4 200 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span158 630-162 829 ntGCF_902472515::NZ_CABROB010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span158 630-162 829 nt4 200 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 630 nt162 829 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS04815GCF_902472515#RDP95_RS04815
HKHybridCurrent focus
158 630-162 829 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS04815The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0068914
Simplified PFAM architecture for HKOC_0068914
PFAM domain coverage: 540 / 1399 aa (38.6%)
1 aa1399 aa
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[19-42] | Reg_prop[65-86] | Reg_prop[363-384] | Reg_prop[594-617] | Reg_prop[642-665] | Y_Y_Y[780-841] | HisKA[889-953] | HATPase_c[1001-1109] | Response_reg[1154-1263] | HTH_18[1321-1398]
- Domain count: 10
- Matched identifier: HKOC_0068914
- Positioned domains: Reg_prop 19-42 ; Reg_prop 65-86 ; Reg_prop 363-384 ; Reg_prop 594-617 ; Reg_prop 642-665 ; Y_Y_Y 780-841 ; HisKA 889-953 ; HATPase_c 1001-1109 ; Response_reg 1154-1263 ; HTH_18 1321-1398
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS04815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key