1 Response_reg#1
7-121 aa · 115 aa · 25.6% of protein
Raw token
Response_reg:7:9.27e-23:121:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS03855
Response regulator NtrC family
uncultured Bacteroides sp. · GCF_902472515
ClassRRTypeNtrCLength450 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS03855Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage280 / 450 aa (62.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 AAA_5#2
168-292 aa · 125 aa · 27.8% of protein
Raw token
AAA_5:168:0.0000000255:292:132:1353 HTH_8#3
409-448 aa · 40 aa · 8.9% of protein
Raw token
HTH_8:409:0.00000000000000451:448:40:40- Raw architecture: Response_reg:7:9.27e-23:121:115:111#AAA_5:168:0.0000000255:292:132:135#HTH_8:409:0.00000000000000451:448:40:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000004.1::G00020
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span135793-137145Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000004.1::G00020Context members
RDP95_RS03855
Partner locus tags
RDP95_RS03855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606114.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS03855Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000004.1Sequence record reported by the local genomic context database.
Genomic interval135 793-137 145 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 793-137 145 ntGCF_902472515::NZ_CABROB010000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000004.1All displayed genes belong to this local TCS context.
Neighborhood span135 793-137 145 nt1 353 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 793 nt137 145 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS03855GCF_902472515#RDP95_RS03855
RRNtrCCurrent focus
135 793-137 145 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS03855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0290964
Simplified PFAM architecture for RROC_0290964
PFAM domain coverage: 393 / 450 aa (87.3%)
1 aa450 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[7-121] | Sigma54_activat[147-311] | AAA_lid_14[317-387] | HTH_8[407-448]
- Domain count: 4
- Matched identifier: RROC_0290964
- Positioned domains: Response_reg 7-121 ; Sigma54_activat 147-311 ; AAA_lid_14 317-387 ; HTH_8 407-448
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key