1 HisKA#1
866-929 aa · 64 aa · 4.6% of protein
Raw token
HisKA:866:0.0000000000000486:929:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS02385
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1395 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS02385Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1395 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage320 / 1395 aa (22.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1395 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
976-1088 aa · 113 aa · 8.1% of protein
Raw token
HATPase_c:976:5.2e-28:1088:113:1093 Response_reg#3
1140-1249 aa · 110 aa · 7.9% of protein
Raw token
Response_reg:1140:5.36e-35:1249:111:1114 HTH_AraC#4
1350-1382 aa · 33 aa · 2.4% of protein
Raw token
HTH_AraC:1350:0.000000898:1382:33:42- Raw architecture: HisKA:866:0.0000000000000486:929:64:64#HATPase_c:976:5.2e-28:1088:113:109#Response_reg:1140:5.36e-35:1249:111:111#HTH_AraC:1350:0.000000898:1382:33:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000003.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span64293-68480Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000003.1::G00015Context members
RDP95_RS02385
Partner locus tags
RDP95_RS02385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606759.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS02385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000003.1Sequence record reported by the local genomic context database.
Genomic interval64 293-68 480 nt4 188 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 293-68 480 ntGCF_902472515::NZ_CABROB010000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span64 293-68 480 nt4 188 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 293 nt68 480 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS02385GCF_902472515#RDP95_RS02385
HKHybridCurrent focus
64 293-68 480 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS02385The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1811 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0069832
Simplified PFAM architecture for HKOC_0069832
PFAM domain coverage: 556 / 1395 aa (39.9%)
1 aa1395 aa
Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[87-109] | Reg_prop[180-197] | Reg_prop[219-239] | Reg_prop[468-487] | Reg_prop[562-583] | Reg_prop[605-627] | Y_Y_Y[748-812] | HisKA[866-929] | HATPase_c[976-1086] | Response_reg[1140-1249] | HTH_18[1307-1385]
- Domain count: 11
- Matched identifier: HKOC_0069832
- Positioned domains: Reg_prop 87-109 ; Reg_prop 180-197 ; Reg_prop 219-239 ; Reg_prop 468-487 ; Reg_prop 562-583 ; Reg_prop 605-627 ; Y_Y_Y 748-812 ; HisKA 866-929 ; HATPase_c 976-1086 ; Response_reg 1140-1249 ; HTH_18 1307-1385
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS02385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key