1 HisKA#1
833-899 aa · 67 aa · 5.0% of protein
Raw token
HisKA:833:0.0000000000373:899:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS02315
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1343 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS02315Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1343 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage330 / 1343 aa (24.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1343 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
946-1054 aa · 109 aa · 8.1% of protein
Raw token
HATPase_c:946:3.28e-29:1054:109:1093 Response_reg#3
1091-1201 aa · 111 aa · 8.3% of protein
Raw token
Response_reg:1091:5.52e-34:1201:112:1114 HTH_AraC#4
1298-1340 aa · 43 aa · 3.2% of protein
Raw token
HTH_AraC:1298:0.00000313:1340:43:42- Raw architecture: HisKA:833:0.0000000000373:899:67:64#HATPase_c:946:3.28e-29:1054:109:109#Response_reg:1091:5.52e-34:1201:112:111#HTH_AraC:1298:0.00000313:1340:43:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000003.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span32425-36456Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000003.1::G00013Context members
RDP95_RS02315
Partner locus tags
RDP95_RS02315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606731.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS02315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000003.1Sequence record reported by the local genomic context database.
Genomic interval32 425-36 456 nt4 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span32 425-36 456 ntGCF_902472515::NZ_CABROB010000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span32 425-36 456 nt4 032 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 425 nt36 456 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS02315GCF_902472515#RDP95_RS02315
HKHybridCurrent focus
32 425-36 456 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS02315The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1811 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0100130
Simplified PFAM architecture for HKOC_0100130
PFAM domain coverage: 564 / 1343 aa (42.0%)
1 aa1343 aa
Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[35-57] | Reg_prop[215-238] | Reg_prop[318-339] | Reg_prop[494-516] | Reg_prop[539-560] | Reg_prop[582-605] | Y_Y_Y[714-778] | HisKA[834-898] | HATPase_c[946-1054] | Response_reg[1091-1201] | HTH_18[1265-1340]
- Domain count: 11
- Matched identifier: HKOC_0100130
- Positioned domains: Reg_prop 35-57 ; Reg_prop 215-238 ; Reg_prop 318-339 ; Reg_prop 494-516 ; Reg_prop 539-560 ; Reg_prop 582-605 ; Y_Y_Y 714-778 ; HisKA 834-898 ; HATPase_c 946-1054 ; Response_reg 1091-1201 ; HTH_18 1265-1340
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS02315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key