1 HisKA#1
843-909 aa · 67 aa · 5.0% of protein
Raw token
HisKA:843:0.000000000201:909:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS02275
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1343 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS02275Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1343 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage327 / 1343 aa (24.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1343 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
956-1064 aa · 109 aa · 8.1% of protein
Raw token
HATPase_c:956:3.31e-29:1064:109:1093 Response_reg#3
1094-1205 aa · 112 aa · 8.3% of protein
Raw token
Response_reg:1094:3.2e-29:1205:114:1114 HTH_AraC#4
1302-1340 aa · 39 aa · 2.9% of protein
Raw token
HTH_AraC:1302:0.000000000629:1340:39:42- Raw architecture: HisKA:843:0.000000000201:909:67:64#HATPase_c:956:3.31e-29:1064:109:109#Response_reg:1094:3.2e-29:1205:114:111#HTH_AraC:1302:0.000000000629:1340:39:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000003.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13227-17258Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000003.1::G00012Context members
RDP95_RS02275
Partner locus tags
RDP95_RS02275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606719.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS02275Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000003.1Sequence record reported by the local genomic context database.
Genomic interval13 227-17 258 nt4 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 227-17 258 ntGCF_902472515::NZ_CABROB010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span13 227-17 258 nt4 032 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 227 nt17 258 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS02275GCF_902472515#RDP95_RS02275
HKHybridCurrent focus
13 227-17 258 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS02275The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1813 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0100129
Simplified PFAM architecture for HKOC_0100129
PFAM domain coverage: 609 / 1343 aa (45.3%)
1 aa1343 aa
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[37-59] | Reg_prop[131-152] | Reg_prop[223-245] | Reg_prop[324-346] | Reg_prop[373-396] | Reg_prop[463-484] | Reg_prop[506-527] | Reg_prop[593-615] | Y_Y_Y[726-788] | HisKA[844-908] | HATPase_c[956-1064] | Response_reg[1094-1204] | HTH_18[1262-1340]
- Domain count: 13
- Matched identifier: HKOC_0100129
- Positioned domains: Reg_prop 37-59 ; Reg_prop 131-152 ; Reg_prop 223-245 ; Reg_prop 324-346 ; Reg_prop 373-396 ; Reg_prop 463-484 ; Reg_prop 506-527 ; Reg_prop 593-615 ; Y_Y_Y 726-788 ; HisKA 844-908 ; HATPase_c 956-1064 ; Response_reg 1094-1204 ; HTH_18 1262-1340
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS02275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key