1 HisKA#1
811-869 aa · 59 aa · 4.5% of protein
Raw token
HisKA:811:0.0000000167:869:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS01805
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1303 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS01805Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1303 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage311 / 1303 aa (23.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1303 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
923-1026 aa · 104 aa · 8.0% of protein
Raw token
HATPase_c:923:2.3e-29:1026:104:1093 Response_reg#3
1062-1172 aa · 111 aa · 8.5% of protein
Raw token
Response_reg:1062:1.6e-27:1172:112:1114 HTH_AraC#4
1267-1303 aa · 37 aa · 2.8% of protein
Raw token
HTH_AraC:1267:0.00000000566:1303:37:42- Raw architecture: HisKA:811:0.0000000167:869:59:64#HATPase_c:923:2.3e-29:1026:104:109#Response_reg:1062:1.6e-27:1172:112:111#HTH_AraC:1267:0.00000000566:1303:37:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000002.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span165344-169255Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000002.1::G00011Context members
RDP95_RS01805
Partner locus tags
RDP95_RS01805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294604784.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS01805Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000002.1Sequence record reported by the local genomic context database.
Genomic interval165 344-169 255 nt3 912 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span165 344-169 255 ntGCF_902472515::NZ_CABROB010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span165 344-169 255 nt3 912 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 344 nt169 255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS01805GCF_902472515#RDP95_RS01805
HKHybridCurrent focus
165 344-169 255 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS01805The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_187 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0123508
Simplified PFAM architecture for HKOC_0123508
PFAM domain coverage: 460 / 1303 aa (35.3%)
1 aa1303 aa
Reg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[396-415] | Reg_prop[566-588] | Y_Y_Y[701-764] | HisKA[811-869] | HATPase_c[919-1026] | Response_reg[1062-1171] | HTH_18[1228-1303]
- Domain count: 7
- Matched identifier: HKOC_0123508
- Positioned domains: Reg_prop 396-415 ; Reg_prop 566-588 ; Y_Y_Y 701-764 ; HisKA 811-869 ; HATPase_c 919-1026 ; Response_reg 1062-1171 ; HTH_18 1228-1303
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS01805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key