1 HisKA#1
835-901 aa · 67 aa · 4.9% of protein
Raw token
HisKA:835:0.0000000000281:901:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS00640
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1368 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS00640Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length1368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage306 / 1368 aa (22.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1368 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
948-1074 aa · 127 aa · 9.3% of protein
Raw token
HATPase_c:948:8.17e-24:1074:127:1093 Response_reg#3
1114-1225 aa · 112 aa · 8.2% of protein
Raw token
Response_reg:1114:2.04e-31:1225:113:111- Raw architecture: HisKA:835:0.0000000000281:901:67:64#HATPase_c:948:8.17e-24:1074:127:109#Response_reg:1114:2.04e-31:1225:113:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span153598-157704Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000001.1::G00004Context members
RDP95_RS00640
Partner locus tags
RDP95_RS00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757688.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS00640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000001.1Sequence record reported by the local genomic context database.
Genomic interval153 598-157 704 nt4 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 598-157 704 ntGCF_902472515::NZ_CABROB010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span153 598-157 704 nt4 107 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 598 nt157 704 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS00640GCF_902472515#RDP95_RS00640
HKHybridCurrent focus
153 598-157 704 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS00640The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_189 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0083185
Simplified PFAM architecture for HKOC_0083185
PFAM domain coverage: 537 / 1368 aa (39.3%)
1 aa1368 aa
Reg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[81-102] | Reg_prop[216-236] | Reg_prop[539-561] | Reg_prop[582-604] | Y_Y_Y[718-781] | HisKA[836-901] | HATPase_c[949-1075] | Response_reg[1114-1224] | HTH_18[1280-1359]
- Domain count: 9
- Matched identifier: HKOC_0083185
- Positioned domains: Reg_prop 81-102 ; Reg_prop 216-236 ; Reg_prop 539-561 ; Reg_prop 582-604 ; Y_Y_Y 718-781 ; HisKA 836-901 ; HATPase_c 949-1075 ; Response_reg 1114-1224 ; HTH_18 1280-1359
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key