1 HisKA#1
831-897 aa · 67 aa · 6.0% of protein
Raw token
HisKA:831:0.000000000000231:897:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS00580
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeClassicLength1117 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902472515#RDP95_RS00580Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length1117 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 1117 aa (17.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1117 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
944-1073 aa · 130 aa · 11.6% of protein
Raw token
HATPase_c:944:5.28e-22:1073:130:109- Raw architecture: HisKA:831:0.000000000000231:897:67:64#HATPase_c:944:5.28e-22:1073:130:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902472515::NZ_CABROB010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span133859-137957Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000001.1::G00003Context members
RDP95_RS00580RDP95_RS24120
Partner locus tags
RDP95_RS00580RDP95_RS24120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_374048981.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS00580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000001.1Sequence record reported by the local genomic context database.
Genomic interval133 859-137 212 nt3 354 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span133 859-137 957 ntGCF_902472515::NZ_CABROB010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span133 859-137 957 nt4 099 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
133 859 nt137 957 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDP95_RS00580GCF_902472515#RDP95_RS00580
HKClassicCurrent focus
133 859-137 212 nt · Forward (+)
RDP95_RS24120GCF_902472515#RDP95_RS24120
RRunclassified
137 190-137 957 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS00580The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c9 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0223928
Simplified PFAM architecture for HKOC_0223928
PFAM domain coverage: 388 / 1117 aa (34.7%)
1 aa1117 aa
Reg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_c
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c
- Raw architecture: Reg_prop[38-60] | Reg_prop[82-104] | Reg_prop[125-148] | Reg_prop[170-188] | Reg_prop[211-233] | Reg_prop[307-324] | Y_Y_Y[713-776] | HisKA[833-897] | HATPase_c[944-1072]
- Domain count: 9
- Matched identifier: HKOC_0223928
- Positioned domains: Reg_prop 38-60 ; Reg_prop 82-104 ; Reg_prop 125-148 ; Reg_prop 170-188 ; Reg_prop 211-233 ; Reg_prop 307-324 ; Y_Y_Y 713-776 ; HisKA 833-897 ; HATPase_c 944-1072
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key