1 HisKA_3#1
127-191 aa · 65 aa · 18.6% of protein
Raw token
HisKA_3:127:0.0000000000205:191:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FQ140_RS09995
Histidine kinase, Classic
Bifidobacterium breve · GCF_902167895
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167895#FQ140_RS09995Stable P2CS identifier used across views.
GenomeGCF_902167895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 349 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
257-335 aa · 79 aa · 22.6% of protein
Raw token
HATPase_c:257:0.0000364:335:89:109- Raw architecture: HisKA_3:127:0.0000000000205:191:65:68#HATPase_c:257:0.0000364:335:89:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167895::NZ_CABHNR010000084.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29441-31214Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBJG463_01899RefSeq proteinWP_260805904.1
Context group ID
GCF_902167895::NZ_CABHNR010000084.1::G00015Context members
FQ140_RS09990FQ140_RS09995
Partner locus tags
FQ140_RS09990FQ140_RS09995
Partner old locus tags
BBJG463_01898BBJG463_01899
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_260805904.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFQ140_RS09995Primary locus identifier stored in the genes table.
Old locus tagBBJG463_01899Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHNR010000084.1Sequence record reported by the local genomic context database.
Genomic interval30 165-31 214 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 441-31 214 ntGCF_902167895::NZ_CABHNR010000084.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167895::NZ_CABHNR010000084.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHNR010000084.1All displayed genes belong to this local TCS context.
Neighborhood span29 441-31 214 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 441 nt31 214 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FQ140_RS09990GCF_902167895#FQ140_RS09990
RRNarL
29 441-30 148 nt · Reverse (-)
FQ140_RS09995GCF_902167895#FQ140_RS09995
HKClassicCurrent focus
30 165-31 214 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902167895#FQ140_RS09995The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2805907
Simplified PFAM architecture for HKOC_2805907
PFAM domain coverage: 68 / 349 aa (19.5%)
1 aa349 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[127-194]
- Domain count: 1
- Matched identifier: HKOC_2805907
- Positioned domains: HisKA_3 127-194
Cluster members and taxonomy
Representative gene: GCF_902167895#FQ140_RS09995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_902167895
AssemblyBifidobacterium_breve_JG_Bg463 · Contighaploid
Genome composition2 345 073 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 12 · RR 16CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key