1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:4.29e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FQ140_RS00720
Response regulator OmpR family
Bifidobacterium breve · GCF_902167895
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167895#FQ140_RS00720Stable P2CS identifier used across views.
GenomeGCF_902167895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.06e-32:229:77:77- Raw architecture: Response_reg:4:4.29e-38:113:111:111#Trans_reg_C:153:1.06e-32:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167895::NZ_CABHNR010000014.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8520-10638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBJG463_00398RefSeq proteinWP_186278235.1
Context group ID
GCF_902167895::NZ_CABHNR010000014.1::G00003Context members
FQ140_RS00720FQ140_RS00725
Partner locus tags
FQ140_RS00720FQ140_RS00725
Partner old locus tags
BBJG463_00398BBJG463_00399
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_186278235.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFQ140_RS00720Primary locus identifier stored in the genes table.
Old locus tagBBJG463_00398Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHNR010000014.1Sequence record reported by the local genomic context database.
Genomic interval8 520-9 224 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 520-10 638 ntGCF_902167895::NZ_CABHNR010000014.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167895::NZ_CABHNR010000014.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHNR010000014.1All displayed genes belong to this local TCS context.
Neighborhood span8 520-10 638 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 520 nt10 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FQ140_RS00720GCF_902167895#FQ140_RS00720
RROmpRCurrent focus
8 520-9 224 nt · Reverse (-)
FQ140_RS00725GCF_902167895#FQ140_RS00725
HKClassic
9 343-10 638 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902167895#FQ140_RS00720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1078876
Simplified PFAM architecture for RROC_1078876
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1078876
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_902167895#FQ140_RS00720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_902167895
AssemblyBifidobacterium_breve_JG_Bg463 · Contighaploid
Genome composition2 345 073 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 12 · RR 16CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key