1 HAMP#1
286-354 aa · 69 aa · 11.9% of protein
Raw token
HAMP:286:0.0000000000959:354:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS11330
Histidine kinase, Classic
Coprococcus phoceensis · GCF_900104635
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900104635#BQ5364_RS11330Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 578 aa (43.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-446 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:369:3.9e-27:446:78:803 HATPase_c#3
465-571 aa · 107 aa · 18.5% of protein
Raw token
HATPase_c:465:0.00000000000434:571:110:109- Raw architecture: HAMP:286:0.0000000000959:354:69:69#His_kinase:369:3.9e-27:446:78:80#HATPase_c:465:0.00000000000434:571:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900104635::NZ_FNWC01000007.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1558273-1560009Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00023Context members
BQ5364_RS11330
Partner locus tags
BQ5364_RS11330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_159431685.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS11330Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 558 273-1 560 009 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 558 273-1 560 009 ntGCF_900104635::NZ_FNWC01000007.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 558 273-1 560 009 nt1 737 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 558 273 nt1 560 009 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BQ5364_RS11330GCF_900104635#BQ5364_RS11330
HKClassicCurrent focus
1 558 273-1 560 009 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS00220Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1134141
Simplified PFAM architecture for HKOC_1134141
PFAM domain coverage: 236 / 586 aa (40.3%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-362] | His_kinase[377-455] | HATPase_c[474-578]
- Domain count: 3
- Matched identifier: HKOC_1134141
- Positioned domains: HAMP 311-362 ; His_kinase 377-455 ; HATPase_c 474-578
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS00220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key