1 HAMP#1
294-362 aa · 69 aa · 11.8% of protein
Raw token
HAMP:294:0.000000000104:362:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG788_RS00220
Histidine kinase, Classic
Coprococcus sp. LG100-32 · GCF_027695925
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695925#PG788_RS00220Stable P2CS identifier used across views.
GenomeGCF_027695925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 586 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-454 aa · 78 aa · 13.3% of protein
Raw token
His_kinase:377:4.96e-27:454:78:803 HATPase_c#3
473-579 aa · 107 aa · 18.3% of protein
Raw token
HATPase_c:473:0.00000000000466:579:110:109- Raw architecture: HAMP:294:0.000000000104:362:69:69#His_kinase:377:4.96e-27:454:78:80#HATPase_c:473:0.00000000000466:579:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695925::NZ_JAQEUC010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42077-45370Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695925::NZ_JAQEUC010000001.1::G00001Context members
PG788_RS00220PG788_RS00225
Partner locus tags
PG788_RS00220PG788_RS00225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004611373.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG788_RS00220Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUC010000001.1Sequence record reported by the local genomic context database.
Genomic interval42 077-43 837 nt1 761 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 077-45 370 ntGCF_027695925::NZ_JAQEUC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695925::NZ_JAQEUC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span42 077-45 370 nt3 294 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 077 nt45 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG788_RS00220GCF_027695925#PG788_RS00220
HKClassicCurrent focus
42 077-43 837 nt · Reverse (-)
PG788_RS00225GCF_027695925#PG788_RS00225
RRunclassified
43 841-45 370 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS00220The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1134141
Simplified PFAM architecture for HKOC_1134141
PFAM domain coverage: 236 / 586 aa (40.3%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-362] | His_kinase[377-455] | HATPase_c[474-578]
- Domain count: 3
- Matched identifier: HKOC_1134141
- Positioned domains: HAMP 311-362 ; His_kinase 377-455 ; HATPase_c 474-578
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS00220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 994 · GCF_027695925
AssemblyASM2769592v1 · Scaffoldhaploid
Genome composition3 193 648 bp · 40,0% GCCoprococcus sp. LG100-32
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key