1 Response_reg#1
6-115 aa · 110 aa · 20.5% of protein
Raw token
Response_reg:6:2.56e-24:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS03115
Response regulator, unclassified
Coprococcus phoceensis · GCF_900104635
ClassRRTypeunclassifiedLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS03115Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 537 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-480 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:438:0.000000479:480:43:423 HTH_AraC#3
501-530 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:501:0.0000193:530:30:42- Raw architecture: Response_reg:6:2.56e-24:115:110:111#HTH_AraC:438:0.000000479:480:43:42#HTH_AraC:501:0.0000193:530:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000006.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span466830-470295Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000006.1::G00004Context members
BQ5364_RS03115BQ5364_RS03120
Partner locus tags
BQ5364_RS03115BQ5364_RS03120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022249999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS03115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000006.1Sequence record reported by the local genomic context database.
Genomic interval466 830-468 443 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span466 830-470 295 ntGCF_900104635::NZ_FNWC01000006.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000006.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000006.1All displayed genes belong to this local TCS context.
Neighborhood span466 830-470 295 nt3 466 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
466 830 nt470 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS03115GCF_900104635#BQ5364_RS03115
RRunclassifiedCurrent focus
466 830-468 443 nt · Forward (+)
BQ5364_RS03120GCF_900104635#BQ5364_RS03120
HKClassic
468 433-470 295 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS09340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0097459
Simplified PFAM architecture for RROC_0097459
PFAM domain coverage: 318 / 537 aa (59.2%)
1 aa537 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[164-291] | HTH_18[452-530]
- Domain count: 3
- Matched identifier: RROC_0097459
- Positioned domains: Response_reg 6-116 ; GGDEF_2 164-291 ; HTH_18 452-530
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS09340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key