1 HAMP#1
191-257 aa · 67 aa · 13.7% of protein
Raw token
HAMP:191:0.0000000307:257:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BQ5364_RS06370
Histidine kinase, Classic
Coprococcus phoceensis · GCF_900104635
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900104635#BQ5364_RS06370Stable P2CS identifier used across views.
GenomeGCF_900104635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 488 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.5% of protein
Raw token
HisKA:262:0.0000000000000854:327:66:643 HATPase_c#3
375-484 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:375:6.3e-31:484:110:109- Raw architecture: HAMP:191:0.0000000307:257:67:69#HisKA:262:0.0000000000000854:327:66:64#HATPase_c:375:6.3e-31:484:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900104635::NZ_FNWC01000007.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span554576-556688Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900104635::NZ_FNWC01000007.1::G00011Context members
BQ5364_RS06365BQ5364_RS06370
Partner locus tags
BQ5364_RS06365BQ5364_RS06370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004611274.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBQ5364_RS06370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FNWC01000007.1Sequence record reported by the local genomic context database.
Genomic interval555 222-556 688 nt1 467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span554 576-556 688 ntGCF_900104635::NZ_FNWC01000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900104635::NZ_FNWC01000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FNWC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span554 576-556 688 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
554 576 nt556 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BQ5364_RS06365GCF_900104635#BQ5364_RS06365
RROmpR
554 576-555 265 nt · Forward (+)
BQ5364_RS06370GCF_900104635#BQ5364_RS06370
HKClassicCurrent focus
555 222-556 688 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS05775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1554644
Simplified PFAM architecture for HKOC_1554644
PFAM domain coverage: 176 / 488 aa (36.1%)
1 aa488 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[262-327] | HATPase_c[375-484]
- Domain count: 2
- Matched identifier: HKOC_1554644
- Positioned domains: HisKA 262-327 ; HATPase_c 375-484
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS05775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 870 993 · GCF_900104635
AssemblyPRJEB16356 · Contigreference genome · haploid
Genome composition3 601 259 bp · 40,0% GCCoprococcus phoceensis
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key