1 HAMP#1
191-257 aa · 67 aa · 13.7% of protein
Raw token
HAMP:191:0.0000000307:257:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG788_RS05775
Histidine kinase, Classic
Coprococcus sp. LG100-32 · GCF_027695925
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695925#PG788_RS05775Stable P2CS identifier used across views.
GenomeGCF_027695925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 488 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.5% of protein
Raw token
HisKA:262:0.0000000000000854:327:66:643 HATPase_c#3
375-484 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:375:6.3e-31:484:110:109- Raw architecture: HAMP:191:0.0000000307:257:67:69#HisKA:262:0.0000000000000854:327:66:64#HATPase_c:375:6.3e-31:484:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695925::NZ_JAQEUC010000006.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44979-47091Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695925::NZ_JAQEUC010000006.1::G00024Context members
PG788_RS05770PG788_RS05775
Partner locus tags
PG788_RS05770PG788_RS05775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004611274.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG788_RS05775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUC010000006.1Sequence record reported by the local genomic context database.
Genomic interval45 625-47 091 nt1 467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 979-47 091 ntGCF_027695925::NZ_JAQEUC010000006.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695925::NZ_JAQEUC010000006.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUC010000006.1All displayed genes belong to this local TCS context.
Neighborhood span44 979-47 091 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 979 nt47 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG788_RS05770GCF_027695925#PG788_RS05770
RROmpR
44 979-45 668 nt · Forward (+)
PG788_RS05775GCF_027695925#PG788_RS05775
HKClassicCurrent focus
45 625-47 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS05775The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1554644
Simplified PFAM architecture for HKOC_1554644
PFAM domain coverage: 176 / 488 aa (36.1%)
1 aa488 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[262-327] | HATPase_c[375-484]
- Domain count: 2
- Matched identifier: HKOC_1554644
- Positioned domains: HisKA 262-327 ; HATPase_c 375-484
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS05775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 994 · GCF_027695925
AssemblyASM2769592v1 · Scaffoldhaploid
Genome composition3 193 648 bp · 40,0% GCCoprococcus sp. LG100-32
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key