1 HAMP#1
283-349 aa · 67 aa · 11.8% of protein
Raw token
HAMP:283:0.0000000000462:349:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS16080
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS16080Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:365:1.55e-27:443:79:803 HATPase_c#3
461-561 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:461:0.000000000018:561:110:109- Raw architecture: HAMP:283:0.0000000000462:349:67:69#His_kinase:365:1.55e-27:443:79:80#HATPase_c:461:0.000000000018:561:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000030.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12746-15962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_03198RefSeq proteinWP_118071038.1
Context group ID
GCF_900066335::NZ_FMEU01000030.1::G00033Context members
QZL78_RS16075QZL78_RS16080
Partner locus tags
QZL78_RS16075QZL78_RS16080
Partner old locus tags
SAMEA3545288_03197SAMEA3545288_03198
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118071038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS16080Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_03198Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000030.1Sequence record reported by the local genomic context database.
Genomic interval14 259-15 962 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 746-15 962 ntGCF_900066335::NZ_FMEU01000030.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000030.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000030.1All displayed genes belong to this local TCS context.
Neighborhood span12 746-15 962 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 746 nt15 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS16075GCF_900066335#QZL78_RS16075
RRunclassified
12 746-14 284 nt · Forward (+)
QZL78_RS16080GCF_900066335#QZL78_RS16080
HKClassicCurrent focus
14 259-15 962 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013317245#G5B12_RS06255Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1082875
Simplified PFAM architecture for HKOC_1082875
PFAM domain coverage: 224 / 595 aa (37.6%)
1 aa595 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[330-376] | His_kinase[393-469] | HATPase_c[490-589]
- Domain count: 3
- Matched identifier: HKOC_1082875
- Positioned domains: HAMP 330-376 ; His_kinase 393-469 ; HATPase_c 490-589
Cluster members and taxonomy
Representative gene: GCF_013317245#G5B12_RS06255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key